Lecture 3 : December 27 , 1998
نویسنده
چکیده
The FASTA algorithm is a heuristic method for string comparison. It was developed by Lipman and Pearson in 1985 [6] and further improved in 1988 [7]. FASTA compares a query string against a single text string. When searching the whole database for matches to a given query, we compare the query using the FASTA algorithm to every string in the database. When looking for an alignment, we might expect to find a few segments in which there will be absolute identity between the two compared strings. The algorithm is using this property and focuses on these identical regions.
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